Postdoc in Microbiome Bioinformatics Workflows

Opportunity summary

Employment type: FULLTIME. A position as a postdoc (100% time) is vacant at the the Arumugam Group, Research unit of Medical Gastroenterology, the Department of Clinical Research, Faculty of Health Sciences, University of Southern Denmark.The position is limited to 3 years with the possibility of extension.Research tasks The position as a postdoc consists of research, teaching, professional development, and guidance in Microbiome Bioinformatics Workflows We seek a bioinformatician to develop computational workflows to analyze large-scale microbiome multi-omics data in multiple projects studying human and animal health, including the consortium project PIG-PARADIGM to combat antimicrobial resistance (AMR) in pig production (http://pig-paradigm.net) and EU Horizon 2020 project MICROB-PREDICT (https://microb-predict.eu/). We strive to implement efficient and scalable workflows to analyze and integrate these data derived from metagenomics, metatranscriptomics, viral metagenomics, metabolomics, and metaproteomics in collaboration with international data science partners (e.g., EMBL-Heidelberg; University of California, Davis) and other project partners. We have developed the MIntO package (https://github.com/arumugamlab/MIntO) that integrates microbiome metagenomic and metatranscriptomic data1 …

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